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the Index to Organism Names
The Index to Organism Names project uses name
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PHYLTEST software allows a comparison of phylogenic trees, estimation of the pairwise distances, relative rate tests, and computation of the time of divergence - Indiana University
PLATO - Partial Likelihoods Assessed Through Optimisation this program takes sequential PHYLIP formatted DNA sequences followed by their maximum likelihood phylogeny. Using a likelihood approach with sliding window analysis and Monte Carlo simulation of the null distribution, anomalously evolving regions in the DNA sequences can be detected and their significance assessed - University of Oxford